IL_8K2B_042

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_042 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1463

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

8K2B|1|L1|A|1276
8K2B|1|L1|U|1277
8K2B|1|L1|C|1278
*
8K2B|1|L1|G|1306
8K2B|1|L1|G|1307
8K2B|1|L1|U|1308
8K2B|1|L1|U|1309
8K2B|1|L1|U|1310

Current chains

Chain L1

16s rRNA

Nearby chains

Chain L6

Large ribosomal subunit protein mL63

Chain LJ

Large ribosomal subunit protein uL10m

Chain LP

Large ribosomal subunit protein uL16m