IL_8K2B_047

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

8K2B|1|L1|A|1389, 8K2B|1|L1|C|1390

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_047 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.1112

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8K2B|1|L1|C|1329
8K2B|1|L1|A|1330
*
8K2B|1|L1|U|1388
8K2B|1|L1|A|1389
8K2B|1|L1|C|1390
8K2B|1|L1|G|1391

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LM

Large ribosomal subunit protein uL13m