IL_8K2B_053
3D structure
- PDB id
- 8K2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 39S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCA*UAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2B_053 not in the Motif Atlas
- Geometric match to IL_4E59_001
- Geometric discrepancy: 0.1387
- The information below is about IL_4E59_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
8K2B|1|L2|C|1627
8K2B|1|L2|C|1628
8K2B|1|L2|A|1629
*
8K2B|1|L2|U|1639
8K2B|1|L2|A|1640
8K2B|1|L2|G|1641
Current chains
- Chain L2
- Val tRNA
Nearby chains
- Chain L5
- Large ribosomal subunit protein mL55
- Chain LR
- Mitochondrial ribosomal protein L18, isoform CRA_b
- Chain Ll
- Large ribosomal subunit protein mL38
- Chain Ln
- Large ribosomal subunit protein mL40
- Chain Lt
- Large ribosomal subunit protein mL46
- Chain Lv
- Large ribosomal subunit protein mL48
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