IL_8K2C_066

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUCGCAGACCCGACGCGCCACG*CG

Length

24 nucleotides

Bulged bases

8K2C|1|L5|C|1717, 8K2C|1|L5|C|1718

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2C|1|L5|C|1694
8K2C|1|L5|U|1695
8K2C|1|L5|C|1696
8K2C|1|L5|G|1697
8K2C|1|L5|C|1698
8K2C|1|L5|A|1699
8K2C|1|L5|G|1700
8K2C|1|L5|A|1701
8K2C|1|L5|C|1702
8K2C|1|L5|C|1703
8K2C|1|L5|C|1704
8K2C|1|L5|G|1705
8K2C|1|L5|A|1706
8K2C|1|L5|C|1707
8K2C|1|L5|G|1708
8K2C|1|L5|C|1715
8K2C|1|L5|G|1716
8K2C|1|L5|C|1717
8K2C|1|L5|C|1718
8K2C|1|L5|A|1719
8K2C|1|L5|C|1720
8K2C|1|L5|G|1721
*
8K2C|1|L5|C|1841
8K2C|1|L5|G|1842

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29