IL_8K2C_070
3D structure
- PDB id
- 8K2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8K2C|1|L5|G|1741
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2C_070 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.0623
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8K2C|1|L5|G|1739
8K2C|1|L5|C|1740
8K2C|1|L5|G|1741
8K2C|1|L5|A|1742
8K2C|1|L5|A|1743
8K2C|1|L5|U|1744
*
8K2C|1|L5|A|1786
8K2C|1|L5|A|1787
8K2C|1|L5|A|1788
8K2C|1|L5|C|1789
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CE
- Coiled-coil domain-containing protein 124
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LI
- Large ribosomal subunit protein uL16
- Chain LT
- 60S ribosomal protein L21
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