IL_8K2C_118

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8K2C|1|L5|A|3663, 8K2C|1|L5|U|3679, 8K2C|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2C_118 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0563

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8K2C|1|L5|C|3660
8K2C|1|L5|G|3661
8K2C|1|L5|A|3662
8K2C|1|L5|A|3663
8K2C|1|L5|G|3664
8K2C|1|L5|G|3665
*
8K2C|1|L5|U|3677
8K2C|1|L5|G|3678
8K2C|1|L5|U|3679
8K2C|1|L5|U|3680
8K2C|1|L5|G|3681
8K2C|1|L5|A|3682
8K2C|1|L5|C|3683
8K2C|1|L5|G|3684

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA