IL_8K2C_124

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8K2C|1|L5|A|3785, 8K2C|1|L5|C|3791, 8K2C|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2C_124 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0739

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8K2C|1|L5|C|3781
8K2C|1|L5|C|3782
8K2C|1|L5|A|3783
8K2C|1|L5|A|3784
8K2C|1|L5|A|3785
8K2C|1|L5|U|3786
8K2C|1|L5|G|3787
8K2C|1|L5|C|3788
8K2C|1|L5|C|3789
8K2C|1|L5|U|3790
8K2C|1|L5|C|3791
8K2C|1|L5|G|3792
*
8K2C|1|L5|C|3808
8K2C|1|L5|G|3809
8K2C|1|L5|C|3810
8K2C|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA