IL_8K2C_219

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8K2C|1|S2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2C_219 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1048

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8K2C|1|S2|G|665
8K2C|1|S2|U|666
8K2C|1|S2|U|667
8K2C|1|S2|A|668
8K2C|1|S2|A|669
8K2C|1|S2|A|670
8K2C|1|S2|A|671
*
8K2C|1|S2|U|1161
8K2C|1|S2|C|1162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23

Chain Sa

40S ribosomal protein S26