IL_8K2D_011

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_011 not in the Motif Atlas

Geometric match to IL_4KQY_004

Geometric discrepancy: 0.3669

The information below is about IL_4KQY_004

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_94991.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

15

Unit IDs

8K2D|1|C1|U|177
8K2D|1|C1|U|178
*
8K2D|1|C1|A|238
8K2D|1|C1|G|239
8K2D|1|C1|U|240
8K2D|1|C1|G|241

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13A

Chain Lh

Large ribosomal subunit protein uL29A

Chain Lj

Large ribosomal subunit protein eL37A