IL_8K2D_013

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

8K2D|1|C1|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_013 not in the Motif Atlas

Homologous match to IL_5TBW_013

Geometric discrepancy: 0.0944

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8K2D|1|C1|G|337
8K2D|1|C1|A|338
8K2D|1|C1|C|339
*
8K2D|1|C3|G|25
8K2D|1|C3|U|26

Current chains

Chain C1

23S rRNA

Chain C3

5.8S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4A

Chain LY

Large ribosomal subunit protein uL24A