IL_8K2D_015
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_015 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.078
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8K2D|1|C1|G|404
8K2D|1|C1|U|405
8K2D|1|C1|G|406
8K2D|1|C1|A|407
8K2D|1|C1|A|408
8K2D|1|C1|A|409
8K2D|1|C1|U|410
*
8K2D|1|C3|A|13
8K2D|1|C3|C|14
8K2D|1|C3|G|15
8K2D|1|C3|G|16
8K2D|1|C3|A|17
8K2D|1|C3|U|18
8K2D|1|C3|C|19
Current chains
- Chain C1
- 23S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LP
- Large ribosomal subunit protein uL22A
- Chain Le
- Large ribosomal subunit protein eL32
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