IL_8K2D_022
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUUG*CAUAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_022 not in the Motif Atlas
- Homologous match to IL_5TBW_022
- Geometric discrepancy: 0.1251
- The information below is about IL_5TBW_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74284.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C1|G|680
8K2D|1|C1|U|681
8K2D|1|C1|U|682
8K2D|1|C1|U|683
8K2D|1|C1|G|684
*
8K2D|1|C1|C|696
8K2D|1|C1|A|697
8K2D|1|C1|U|698
8K2D|1|C1|A|699
8K2D|1|C1|C|700
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LL
- Large ribosomal subunit protein eL13A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain La
- Large ribosomal subunit protein uL15
Coloring options: