IL_8K2D_026

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_026 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.115

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8K2D|1|C1|C|758
8K2D|1|C1|U|759
8K2D|1|C1|G|760
8K2D|1|C1|A|761
8K2D|1|C1|U|762
8K2D|1|C1|G|763
*
8K2D|1|C1|C|768
8K2D|1|C1|G|769
8K2D|1|C1|G|770
8K2D|1|C1|A|771
8K2D|1|C1|U|772
8K2D|1|C1|G|773

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13A

Chain La

Large ribosomal subunit protein uL15

Chain Lo

Large ribosomal subunit protein eL42A