IL_8K2D_029

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

8K2D|1|C1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_029 not in the Motif Atlas

Geometric match to IL_4V9F_025

Geometric discrepancy: 0.1167

The information below is about IL_4V9F_025

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8K2D|1|C1|A|828
8K2D|1|C1|U|829
*
8K2D|1|C1|A|895
8K2D|1|C1|A|896
8K2D|1|C1|U|897

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain Lg

Large ribosomal subunit protein eL34A