IL_8K2D_038

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8K2D|1|C1|G|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_038 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.1106

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8K2D|1|C1|A|983
8K2D|1|C1|G|984
8K2D|1|C1|U|985
*
8K2D|1|C1|A|1099
8K2D|1|C1|U|1100

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30A

Chain LQ

Large ribosomal subunit protein eL18A

Chain LT

Large ribosomal subunit protein eL21A

Chain Lb

Large ribosomal subunit protein eL29