IL_8K2D_040

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_040 not in the Motif Atlas

Homologous match to IL_8C3A_042

Geometric discrepancy: 0.0681

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8K2D|1|C1|A|997
8K2D|1|C1|A|998
*
8K2D|1|C1|U|1050
8K2D|1|C1|U|1051
8K2D|1|C1|U|1052

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Large ribosomal subunit protein uL16

Chain LT

Large ribosomal subunit protein eL21A