IL_8K2D_042

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_042 not in the Motif Atlas

Homologous match to IL_5TBW_041

Geometric discrepancy: 0.1248

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8K2D|1|C1|A|1006
8K2D|1|C1|U|1007
8K2D|1|C1|U|1008
8K2D|1|C1|A|1009
*
8K2D|1|C1|U|1041
8K2D|1|C1|U|1042
8K2D|1|C1|C|1043
8K2D|1|C1|U|1044

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Large ribosomal subunit protein uL16