IL_8K2D_044

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

8K2D|1|C1|U|1015, 8K2D|1|C1|C|1016, 8K2D|1|C1|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_044 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3086

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8K2D|1|C1|U|1014
8K2D|1|C1|U|1015
8K2D|1|C1|C|1016
8K2D|1|C1|C|1017
8K2D|1|C1|G|1018
*
8K2D|1|C1|U|1034
8K2D|1|C1|G|1035
8K2D|1|C1|A|1036

Current chains

Chain C1

23S rRNA

Nearby chains

Chain CS

Suppressor protein STM1

Chain LD

Large ribosomal subunit protein uL18

Chain LJ

Large ribosomal subunit protein uL5A