IL_8K2D_047

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

8K2D|1|C1|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_047 not in the Motif Atlas

Homologous match to IL_8C3A_048

Geometric discrepancy: 0.0849

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8K2D|1|C1|U|1074
8K2D|1|C1|A|1075
8K2D|1|C1|C|1076
*
8K2D|1|C1|G|1083
8K2D|1|C1|A|1084

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LT

Large ribosomal subunit protein eL21A

Chain Lb

Large ribosomal subunit protein eL29