IL_8K2D_052
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUA*UU
- Length
- 5 nucleotides
- Bulged bases
- 8K2D|1|C1|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_052 not in the Motif Atlas
- Homologous match to IL_5TBW_050
- Geometric discrepancy: 0.1358
- The information below is about IL_5TBW_050
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
8K2D|1|C1|A|1180
8K2D|1|C1|U|1181
8K2D|1|C1|A|1182
*
8K2D|1|C1|U|1324
8K2D|1|C1|U|1325
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL30A
- Chain LM
- Large ribosomal subunit protein eL14A
- Chain LO
- Large ribosomal subunit protein uL13A
- Chain LS
- Large ribosomal subunit protein eL20A
- Chain Lf
- Large ribosomal subunit protein eL33A
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