IL_8K2D_057

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8K2D|1|C1|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_057 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3522

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8K2D|1|C1|G|1234
8K2D|1|C1|U|1235
8K2D|1|C1|G|1236
8K2D|1|C1|G|1237
8K2D|1|C1|C|1238
*
8K2D|1|C1|G|1250
8K2D|1|C1|A|1251
8K2D|1|C1|A|1252
8K2D|1|C1|U|1253
8K2D|1|C1|C|1254

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain LK

Large ribosomal subunit protein uL11A