3D structure

PDB id
8K2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAG*CG
Length
5 nucleotides
Bulged bases
8K2D|1|C1|A|1386
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8K2D_060 not in the Motif Atlas
Homologous match to IL_8C3A_062
Geometric discrepancy: 0.1693
The information below is about IL_8C3A_062
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

8K2D|1|C1|C|1385
8K2D|1|C1|A|1386
8K2D|1|C1|G|1387
*
8K2D|1|C1|C|1420
8K2D|1|C1|G|1421

Current chains

Chain C1
23S rRNA

Nearby chains

Chain C3
5.8S ribosomal RNA; 5.8S rRNA
Chain LC
Large ribosomal subunit protein uL4A
Chain LE
Large ribosomal subunit protein eL6A
Chain Le
Large ribosomal subunit protein eL32

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.333 s
Application loaded.