IL_8K2D_064

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_064 not in the Motif Atlas

Geometric match to IL_4V9F_050

Geometric discrepancy: 0.0904

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

8K2D|1|C1|G|1492
8K2D|1|C1|G|1493
8K2D|1|C1|U|1494
8K2D|1|C1|U|1495
*
8K2D|1|C1|A|1835
8K2D|1|C1|C|1836

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LX

Large ribosomal subunit protein uL23

Chain Lg

Large ribosomal subunit protein eL34A

Chain Lj

Large ribosomal subunit protein eL37A

Chain Ll

Large ribosomal subunit protein eL39