IL_8K2D_065

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

8K2D|1|C1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_065 not in the Motif Atlas

Geometric match to IL_4V9F_051

Geometric discrepancy: 0.1775

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

8K2D|1|C1|U|1501
8K2D|1|C1|C|1502
8K2D|1|C1|A|1503
8K2D|1|C1|A|1504
8K2D|1|C1|C|1505
*
8K2D|1|C1|G|1513
8K2D|1|C1|G|1514
8K2D|1|C1|A|1515

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL22A

Chain LR

Large ribosomal subunit protein eL19A

Chain Ll

Large ribosomal subunit protein eL39