IL_8K2D_081
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 8K2D|1|C1|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_081 not in the Motif Atlas
- Geometric match to IL_4V9F_062
- Geometric discrepancy: 0.1177
- The information below is about IL_4V9F_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_76758.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
8K2D|1|C1|A|1901
8K2D|1|C1|G|1902
8K2D|1|C1|U|1903
8K2D|1|C1|C|1904
8K2D|1|C1|G|1905
8K2D|1|C1|G|1906
*
8K2D|1|C1|C|2333
8K2D|1|C1|U|2334
8K2D|1|C1|G|2335
8K2D|1|C1|U|2336
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LV
- Large ribosomal subunit protein uL14A
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