3D structure

PDB id
8K2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GC*GCAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8K2D_092 not in the Motif Atlas
Geometric match to IL_5TBW_089
Geometric discrepancy: 0.1085
The information below is about IL_5TBW_089
Detailed Annotation
Bulged stacked bases
Broad Annotation
Bulged stacked bases
Motif group
IL_22551.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
9

Unit IDs

8K2D|1|C1|G|2276
8K2D|1|C1|C|2277
*
8K2D|1|C1|G|2307
8K2D|1|C1|C|2308
8K2D|1|C1|A|2309
8K2D|1|C1|U|2310

Current chains

Chain C1
23S rRNA

Nearby chains

Chain Ln
Large ribosomal subunit protein eL41A

Coloring options:


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