IL_8K2D_092
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GC*GCAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_092 not in the Motif Atlas
- Geometric match to IL_5TBW_089
- Geometric discrepancy: 0.1085
- The information below is about IL_5TBW_089
- Detailed Annotation
- Bulged stacked bases
- Broad Annotation
- Bulged stacked bases
- Motif group
- IL_22551.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 9
Unit IDs
8K2D|1|C1|G|2276
8K2D|1|C1|C|2277
*
8K2D|1|C1|G|2307
8K2D|1|C1|C|2308
8K2D|1|C1|A|2309
8K2D|1|C1|U|2310
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain Ln
- Large ribosomal subunit protein eL41A
Coloring options: