IL_8K2D_096

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8K2D|1|C1|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_096 not in the Motif Atlas

Homologous match to IL_8C3A_098

Geometric discrepancy: 0.0876

The information below is about IL_8C3A_098

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8K2D|1|C1|G|2409
8K2D|1|C1|U|2410
8K2D|1|C1|U|2411
*
8K2D|1|C1|A|2811
8K2D|1|C1|C|2812

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4A

Chain La

Large ribosomal subunit protein uL15

Chain Lb

Large ribosomal subunit protein eL29