IL_8K2D_098

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8K2D|1|C1|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_098 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1019

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8K2D|1|C1|U|2423
8K2D|1|C1|A|2424
8K2D|1|C1|G|2425
*
8K2D|1|C1|U|2604
8K2D|1|C1|G|2605
8K2D|1|C1|G|2606
8K2D|1|C1|G|2607

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain LN

Large ribosomal subunit protein eL15A

Chain Lo

Large ribosomal subunit protein eL42A