IL_8K2D_100

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUGUAGAAUAA*UAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2D|1|C1|G|2451
8K2D|1|C1|G|2452
8K2D|1|C1|U|2453
8K2D|1|C1|G|2454
8K2D|1|C1|U|2455
8K2D|1|C1|A|2456
8K2D|1|C1|G|2457
8K2D|1|C1|A|2458
8K2D|1|C1|A|2459
8K2D|1|C1|U|2460
8K2D|1|C1|A|2461
8K2D|1|C1|A|2462
*
8K2D|1|C1|U|2493
8K2D|1|C1|A|2494
8K2D|1|C1|C|2495

Current chains

Chain C1

23S rRNA

Nearby chains

Chain L1

Large ribosomal subunit protein uL1A