IL_8K2D_105

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

8K2D|1|C1|A|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_105 not in the Motif Atlas

Geometric match to IL_5WWT_001

Geometric discrepancy: 0.3038

The information below is about IL_5WWT_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8K2D|1|C1|G|2714
8K2D|1|C1|A|2715
8K2D|1|C1|U|2716
*
8K2D|1|C1|A|2740
8K2D|1|C1|C|2741

Current chains

Chain C1

23S rRNA

Nearby chains

Chain Lb

Large ribosomal subunit protein eL29

Chain Lo

Large ribosomal subunit protein eL42A