IL_8K2D_129
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAU*AC
- Length
- 5 nucleotides
- Bulged bases
- 8K2D|1|C1|A|3178
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_129 not in the Motif Atlas
- Homologous match to IL_5TBW_123
- Geometric discrepancy: 0.1271
- The information below is about IL_5TBW_123
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
8K2D|1|C1|G|3177
8K2D|1|C1|A|3178
8K2D|1|C1|U|3179
*
8K2D|1|C1|A|3210
8K2D|1|C1|C|3211
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LE
- Large ribosomal subunit protein eL6A
- Chain LM
- Large ribosomal subunit protein eL14A
- Chain LO
- Large ribosomal subunit protein uL13A
- Chain LS
- Large ribosomal subunit protein eL20A
- Chain Lf
- Large ribosomal subunit protein eL33A
Coloring options: