IL_8K2D_132

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

8K2D|1|C1|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_132 not in the Motif Atlas

Homologous match to IL_8C3A_133

Geometric discrepancy: 0.1882

The information below is about IL_8C3A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60154.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8K2D|1|C1|C|3225
8K2D|1|C1|A|3226
8K2D|1|C1|A|3227
8K2D|1|C1|C|3228
8K2D|1|C1|G|3229
*
8K2D|1|C1|U|3258
8K2D|1|C1|U|3259
8K2D|1|C1|G|3260

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6A

Chain LM

Large ribosomal subunit protein eL14A

Chain LO

Large ribosomal subunit protein uL13A

Chain Lf

Large ribosomal subunit protein eL33A