IL_8K2D_162
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_162 not in the Motif Atlas
- Homologous match to IL_8C3A_411
- Geometric discrepancy: 0.2326
- The information below is about IL_8C3A_411
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71854.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C2|U|318
8K2D|1|C2|U|319
8K2D|1|C2|U|320
8K2D|1|C2|C|321
8K2D|1|C2|G|322
8K2D|1|C2|A|323
*
8K2D|1|C2|U|345
8K2D|1|C2|G|346
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Large ribosomal subunit protein eL19A
- Chain SI
- 40S ribosomal protein S8-A
- Chain SL
- Small ribosomal subunit protein uS17A
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