3D structure

PDB id
8K2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAU*AAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8K2D_165 not in the Motif Atlas
Homologous match to IL_8C3A_414
Geometric discrepancy: 0.1508
The information below is about IL_8C3A_414
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_42997.1
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
18

Unit IDs

8K2D|1|C2|C|411
8K2D|1|C2|A|412
8K2D|1|C2|U|413
*
8K2D|1|C2|A|420
8K2D|1|C2|A|421
8K2D|1|C2|G|422

Current chains

Chain C2
18S rRNA

Nearby chains

Chain CD
Elongation factor 2
Chain LV
Large ribosomal subunit protein uL14A
Chain SG
40S ribosomal protein S6-A

Coloring options:


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