IL_8K2D_176
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 8K2D|1|C2|A|619
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_176 not in the Motif Atlas
- Homologous match to IL_8C3A_426
- Geometric discrepancy: 0.1213
- The information below is about IL_8C3A_426
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.4
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
8K2D|1|C2|G|616
8K2D|1|C2|U|617
8K2D|1|C2|U|618
8K2D|1|C2|A|619
8K2D|1|C2|A|620
8K2D|1|C2|A|621
8K2D|1|C2|A|622
*
8K2D|1|C2|U|1104
8K2D|1|C2|C|1105
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SX
- 40S ribosomal protein S23-A
- Chain Sa
- Small ribosomal subunit protein eS26B
Coloring options: