3D structure

PDB id
8K2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUU*AUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8K2D_181 not in the Motif Atlas
Homologous match to IL_4V88_424
Geometric discrepancy: 0.1505
The information below is about IL_4V88_424
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

8K2D|1|C2|U|748
8K2D|1|C2|U|749
8K2D|1|C2|U|750
*
8K2D|1|C2|A|799
8K2D|1|C2|U|800
8K2D|1|C2|G|801

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SE
40S ribosomal protein S4-A
Chain SH
40S ribosomal protein S7-A
Chain SL
Small ribosomal subunit protein uS17A
Chain SW
40S ribosomal protein S22-A

Coloring options:


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