IL_8K2D_184

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_184 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.1028

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

8K2D|1|C2|A|865
8K2D|1|C2|G|866
*
8K2D|1|C2|C|962
8K2D|1|C2|A|963
8K2D|1|C2|U|964
8K2D|1|C2|U|965

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S22-A

Chain Sb

40S ribosomal protein S27-A