IL_8K2D_189

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUG*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_189 not in the Motif Atlas

Geometric match to IL_5ZTM_002

Geometric discrepancy: 0.1281

The information below is about IL_5ZTM_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8K2D|1|C2|U|893
8K2D|1|C2|U|894
8K2D|1|C2|G|895
*
8K2D|1|C2|U|917
8K2D|1|C2|U|918
8K2D|1|C2|A|919

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A