IL_8K2D_200
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_200 not in the Motif Atlas
- Homologous match to IL_4V88_444
- Geometric discrepancy: 0.1381
- The information below is about IL_4V88_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8K2D|1|C2|C|1173
8K2D|1|C2|C|1174
8K2D|1|C2|U|1175
*
8K2D|1|C2|G|1464
8K2D|1|C2|C|1465
8K2D|1|C2|G|1466
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SQ
- Small ribosomal subunit protein uS9A
- Chain SS
- Small ribosomal subunit protein uS13A
- Chain ST
- Small ribosomal subunit protein eS19A
- Chain SU
- Small ribosomal subunit protein uS10
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