IL_8K2D_213

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

8K2D|1|C2|U|1370, 8K2D|1|C2|A|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_213 not in the Motif Atlas

Homologous match to IL_4V88_457

Geometric discrepancy: 0.238

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8K2D|1|C2|G|1352
8K2D|1|C2|U|1353
8K2D|1|C2|G|1354
*
8K2D|1|C2|U|1369
8K2D|1|C2|U|1370
8K2D|1|C2|A|1371
8K2D|1|C2|U|1372
8K2D|1|C2|C|1373

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9A

Chain ST

Small ribosomal subunit protein eS19A