IL_8K2D_215
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_215 not in the Motif Atlas
- Homologous match to IL_8C3A_466
- Geometric discrepancy: 0.1237
- The information below is about IL_8C3A_466
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48143.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C2|G|1480
8K2D|1|C2|C|1481
8K2D|1|C2|C|1482
8K2D|1|C2|A|1483
8K2D|1|C2|G|1484
8K2D|1|C2|C|1485
8K2D|1|C2|G|1486
8K2D|1|C2|A|1487
*
8K2D|1|C2|U|1519
8K2D|1|C2|U|1520
8K2D|1|C2|G|1521
8K2D|1|C2|U|1522
8K2D|1|C2|G|1523
8K2D|1|C2|A|1524
8K2D|1|C2|A|1525
8K2D|1|C2|A|1526
8K2D|1|C2|C|1527
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SF
- Small ribosomal subunit protein uS7
- Chain SQ
- Small ribosomal subunit protein uS9A
- Chain ST
- Small ribosomal subunit protein eS19A
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14A
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