IL_8K2D_216
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 8K2D|1|C2|U|1491, 8K2D|1|C2|A|1516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_216 not in the Motif Atlas
- Homologous match to IL_4V88_460
- Geometric discrepancy: 0.2913
- The information below is about IL_4V88_460
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_77092.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C2|G|1488
8K2D|1|C2|U|1489
8K2D|1|C2|C|1490
8K2D|1|C2|U|1491
8K2D|1|C2|A|1492
8K2D|1|C2|A|1493
8K2D|1|C2|C|1494
*
8K2D|1|C2|G|1513
8K2D|1|C2|U|1514
8K2D|1|C2|A|1515
8K2D|1|C2|A|1516
8K2D|1|C2|U|1517
8K2D|1|C2|C|1518
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain ST
- Small ribosomal subunit protein eS19A
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14A
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