IL_8K2D_243

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

8K2D|1|C1|U|979, 8K2D|1|C1|A|980, 8K2D|1|C1|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2D|1|C1|C|977
8K2D|1|C1|G|978
8K2D|1|C1|U|979
8K2D|1|C1|A|980
8K2D|1|C1|U|981
*
8K2D|1|C1|A|1102
8K2D|1|C1|A|1103
8K2D|1|C1|G|1104

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30A

Chain LQ

Large ribosomal subunit protein eL18A

Chain Lb

Large ribosomal subunit protein eL29