IL_8K2D_246
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_246 not in the Motif Atlas
- Homologous match to IL_8P9A_338
- Geometric discrepancy: 0.1096
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.2
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8K2D|1|C1|C|2889
8K2D|1|C1|A|2890
8K2D|1|C1|U|2891
8K2D|1|C1|A|2892
*
8K2D|1|C1|U|2909
8K2D|1|C1|A|2910
8K2D|1|C1|A|2911
8K2D|1|C1|G|2912
8K2D|1|C1|C|2913
8K2D|1|C1|G|2914
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LH
- Large ribosomal subunit protein uL6A
- Chain LO
- Large ribosomal subunit protein uL13A
- Chain LV
- Large ribosomal subunit protein uL14A
- Chain Lm
- Ubiquitin-ribosomal protein eL40A fusion protein
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