IL_8K2D_253

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUAG*CUUCU

Length

10 nucleotides

Bulged bases

8K2D|1|C2|A|1346, 8K2D|1|C2|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_253 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.2115

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2D|1|C2|A|1345
8K2D|1|C2|A|1346
8K2D|1|C2|U|1347
8K2D|1|C2|A|1348
8K2D|1|C2|G|1349
*
8K2D|1|C2|C|1376
8K2D|1|C2|U|1377
8K2D|1|C2|U|1378
8K2D|1|C2|C|1379
8K2D|1|C2|U|1380

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9A

Chain SU

Small ribosomal subunit protein uS10