IL_8K4E_018

3D structure

PDB id

8K4E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K4E_018 not in the Motif Atlas

Homologous match to IL_5J7L_018

Geometric discrepancy: 0.1552

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

8K4E|1|A|A|371
8K4E|1|A|C|372
8K4E|1|A|A|373
8K4E|1|A|A|374
8K4E|1|A|U|375
*
8K4E|1|A|A|389
8K4E|1|A|U|390

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16