IL_8K4E_047
3D structure
- PDB id
- 8K4E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GG*UCAUC
- Length
- 7 nucleotides
- Bulged bases
- 8K4E|1|A|C|1200, 8K4E|1|A|A|1201
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K4E_047 not in the Motif Atlas
- Homologous match to IL_6CZR_155
- Geometric discrepancy: 0.1627
- The information below is about IL_6CZR_155
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_95583.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8K4E|1|A|G|1057
8K4E|1|A|G|1058
*
8K4E|1|A|U|1199
8K4E|1|A|C|1200
8K4E|1|A|A|1201
8K4E|1|A|U|1202
8K4E|1|A|C|1203
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
Coloring options: