IL_8K4E_063

3D structure

PDB id

8K4E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGUACGGC*GUUAAAAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K4E_063 not in the Motif Atlas

Geometric match to IL_6UFM_002

Geometric discrepancy: 0.262

The information below is about IL_6UFM_002

Detailed Annotation

10x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_22278.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8K4E|1|A|G|887
8K4E|1|A|G|888
8K4E|1|A|A|889
8K4E|1|A|G|890
8K4E|1|A|U|891
8K4E|1|A|A|892
8K4E|1|A|C|893
8K4E|1|A|G|894
8K4E|1|A|G|895
8K4E|1|A|C|896
*
8K4E|1|A|G|903
8K4E|1|A|U|904
8K4E|1|A|U|905
8K4E|1|A|A|906
8K4E|1|A|A|907
8K4E|1|A|A|908
8K4E|1|A|A|909
8K4E|1|A|C|910

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12