IL_8K7W_002
3D structure
- PDB id
- 8K7W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Broccoli aptamer with DFHBI-1T
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.24 Å
Loop
- Sequence
- GACGGUCGGGU*AGUAGAGUGUGGGC
- Length
- 25 nucleotides
- Bulged bases
- 8K7W|1|A|U|8, 8K7W|1|A|A|37, 8K7W|1|A|A|39, 8K7W|1|A|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64858.3
- Basepair signature
- cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
8K7W|1|A|G|3
8K7W|1|A|A|4
8K7W|1|A|C|5
8K7W|1|A|G|6
8K7W|1|A|G|7
8K7W|1|A|U|8
8K7W|1|A|C|9
8K7W|1|A|G|10
8K7W|1|A|G|11
8K7W|1|A|G|12
8K7W|1|A|U|13
*
8K7W|1|A|A|34
8K7W|1|A|G|35
8K7W|1|A|U|36
8K7W|1|A|A|37
8K7W|1|A|G|38
8K7W|1|A|A|39
8K7W|1|A|G|40
8K7W|1|A|U|41
8K7W|1|A|G|42
8K7W|1|A|U|43
8K7W|1|A|G|44
8K7W|1|A|G|45
8K7W|1|A|G|46
8K7W|1|A|C|47
Current chains
- Chain A
- RNA (49-MER)
Nearby chains
No other chains within 10ÅColoring options: