IL_8K7W_008

3D structure

PDB id

8K7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Broccoli aptamer with DFHBI-1T

Experimental method

X-RAY DIFFRACTION

Resolution

2.24 Å

Loop

Sequence

CC*GUCG

Length

6 nucleotides

Bulged bases

8K7W|1|A|C|32||||2_655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K7W_008 not in the Motif Atlas

Geometric match to IL_5LYS_006

Geometric discrepancy: 0.1278

The information below is about IL_5LYS_006

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

8K7W|1|A|C|14||||2_655
8K7W|1|A|C|15||||2_655
*
8K7W|1|A|G|30||||2_655
8K7W|1|A|U|31||||2_655
8K7W|1|A|C|32||||2_655
8K7W|1|A|G|33||||2_655

Current chains

Chain A

RNA (49-MER)

Nearby chains